Provided are an apparatus and method for performing low-cost and high-sensitivity single-cell gene expression analysis. A single cell analysis apparatus comprising: A cell sorter comprising a flow path for introducing a suspension comprising a plurality of cells and a selection device for selecting a portion of the plurality of cells; and a single cell analysis device comprising a cell capture unit for capturing cells and a nucleic acid capture unit for capturing mRNA derived from the cells, wherein the cell selected by the cell sorter can be placed on the single cell capture device, Characterized in that the suspension introduced into the flow path (a) comprises a protein, but the suspension substantially does not have nuclease activity, or (b) does not comprise a protein comprising a component having nuclease activity, Single cell analysis device. Figure 2

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